[{"data":1,"prerenderedAt":-1},["ShallowReactive",2],{"doc-detail-151072-en":3,"doc-seo-151072-105":30,"detail-sidebar-cat-0-en-105":89},{"code":4,"msg":5,"data":6},0,"success",{"doc_id":7,"user_id":8,"nickname":9,"user_avatar":10,"doc_module":4,"category_id":11,"category_name":12,"doc_title":13,"doc_description":14,"doc_content":15,"file_id":16,"file_url":17,"file_type":18,"file_size":19,"view_count":4,"is_deleted":4,"is_public":20,"is_downloadable":20,"audit_status":20,"page_count":21,"language":22,"language_code":23,"site_id":24,"html_lang":23,"table_of_contents":25,"faqs":26,"seo_title":27,"seo_description":14,"update_tm":28,"read_time":29},151072,549758252649,"Ivy","https://ap-avatar.wpscdn.com/avatar/8000253669c5317157?_k=1778319167496531819",4,"Exam","Species delimitation based on molecular data","PhD course on species delimitation based on molecular data (2 ECTS) combining population genetic and phylogenetic approaches. The program introduces core concepts from coalescent theory, surveys species delimitation methods that use DNA data, and explains how to infer species trees from sequence information. Methodology developers deliver lectures, present software tools, and guide computer exercises using Structurama, Brownie, STEM, STEM-hy, *BEAST, and bpp. Students complete practical project work and presentations.","Forbio and University of Gothenburg are pleased to invite you to the PhD course  \nSpecies delimitation based on molecular data (2 ECTS)  \nThere is a growing interest in using molecular data for species delimitation by combining population genetic and phylogenetic methods. The course will introduce some of the basic ideas and software available to delimit species and inferring species trees using DNA data. Some of the fore-front methodology developers within the research area will lecture, present their software and lead computer exercises during the course.  \nAims ofthe course:  \nThe course aims to give the students  \n• a basic understanding of coalescent theory  \n• an overview of species delimitation methods based on molecular data  \n• a basic understanding of how to use some available software (Structurama, Brownie, STEM, STEM-hy, *BEAST, bpp) for species delimitation  \nPrerequisites:  \nThe course includes advanced topics in phylogenetic theory, and therefore basic knowledge of phylogenetics and some experience with tree inference using Maximum Likelihood and Bayesian based methods is necessary.  \nPreliminary schedule  \nSunday 12 (Department of Plant and Environmental Sciences)  \n09.00-12.00 Mats Töpel-Introduction to the UNIX environment.  \n13.00-17.00 Serik Sagitov-Introduction to coalescent theory, Hardy-Weinberg equilibrium, MCMC  \n17.00-?? Social activities  \nMonday 13 (Konferenscentrum Wallenberg)  \n09.00-13.00 John Huelsenbeck-Structurama, lecture and exercise  \n14.00-18.00 Brian O'Meara-Brownie, online video lecture and exercise  \nTuesday 14 (Konferenscentrum Wallenberg)  \n09.00-13.00 Laura Kubatko-STEM and STEM-hy, lecture and exercise  \n14.00-18.00 Joseph Heled- *BEAST, lecture and exercise  \nWednesday 15 (Konferenscentrum Wallenberg)  \n09.00-13.00 Bruce Rannala-bpp, lecture and exercise  \n14.00-18.00 Project work  \nThursday 16 (Konferenscentrum Wallenberg)  \n09.00-18.00 Project work  \nFriday 17 (Konferenscentrum Wallenberg)  \n09.00-12.00 Project presentations/discussions  \nPractical information  \nApply by sending an application including a CV, a short description of your PhD/research project and how you would benefit from attending the course, and a proposal for a project during the course to Magnus Popp  \n([magnus.popp@nhm.uio.no](magnus.popp@nhm.uio.no)) before October 15, 2010. The number of participants is limited to 25.  \nStudents are asked to bring laptops (with Mac OS X 10.4 or later, GNU/Linux, or Windows/Cygwin) for the computer exercises. Make sure you have administrator privilegies and can install software on the machine.  \nThe course starts on December 12 (Sunday) with a brief introduction to the UNIX operating system and file handling. Students without previous experience of working in a text based UNIX environment, or students who need help installing the Cygwin modules (Windows only) necessary to access the computing facilities that will be used during the course are asked to attend this lecture/exercise. Please indicate in your application whether or not you plan to attend the UNIX introduction/software installation session.  \nThe lectures and exercises on December 12 (Sunday) will be held at the Department of Plant and Environmental Sciences, Carl Skottsberg gata 22 B, Gothenburg, Sweden.  \nThe lectures and exercises on December 13-17 (Monday-Friday) will be held at Konferenscentrum Wallenberg, Medicinaregatan 20A, Gothenburg, Sweden.  \nTravel and accomodation costs will be covered for ForBio members. See more information about membership at  \n[http://www.nhm.uio.no/english/research/forbio/faq/](http://www.nhm.uio.no/english/research/forbio/faq/)  \nSend questions/comments to Magnus Popp ([magnus.popp@nhm.uio.no](magnus.popp@nhm.uio.no)) or Bengt oxelman ([bengt.oxelman@dpes.gu.se](bengt.oxelman@dpes.gu.se)).  \nTeachers:  \nProf Serik Sagitov, Department of Mathematical Sciences, Chalmers University of Technology, Göteborg, Sweden Prof John Huelsenbeck, Department of Integrative Biology, University ","cbCairxzPt3xICFd","https://ap.wps.com/l/cbCairxzPt3xICFd","pdf",171653,1,2,"English","en",105,"# Course aims and scope\n# Prerequisites\n# Preliminary schedule\n## Week schedule (Sunday to Friday)\n# Practical information and application","[{\"question\":\"What is the course about and what learning outcomes does it target?\",\"answer\":\"The course focuses on species delimitation using molecular data, introducing coalescent theory and overviewing delimitation methods based on DNA. It also provides basic guidance for using tools such as Structurama, Brownie, STEM, STEM-hy, *BEAST, and bpp.\"},{\"question\":\"What prerequisites are required before attending?\",\"answer\":\"Participants need basic knowledge of phylogenetics and some experience with tree inference using Maximum Likelihood and Bayesian methods. The course also includes advanced topics in phylogenetic theory.\"},{\"question\":\"How can applicants apply and what is the deadline and participant limit?\",\"answer\":\"Apply by sending an application including a CV, a short description of the PhD/research project, how attending benefits the project, and a course project proposal to Magnus Popp before October 15, 2010. The number of participants is limited to 25.\"}]","Species delimitation based on molecular data | PDF",1787832319,5,{"code":4,"msg":31,"data":32},"ok",{"site_id":24,"language":23,"slug":33,"title":13,"keywords":34,"description":14,"schema_data":35,"social_meta":84,"head_meta":86,"extra_data":88,"updated_unix":28},"species-delimitation-based-on-molecular-data","",{"@graph":36,"@context":83},[37,52,66],{"@type":38,"itemListElement":39},"BreadcrumbList",[40,44,47,50],{"item":41,"name":42,"@type":43,"position":20},"https://docshare.wps.com","Home","ListItem",{"item":45,"name":46,"@type":43,"position":21},"https://docshare.wps.com/document/","Document",{"item":48,"name":12,"@type":43,"position":49},"https://docshare.wps.com/document/exam/",3,{"item":51,"name":13,"@type":43,"position":11},"https://docshare.wps.com/document/species-delimitation-based-on-molecular-data/151072/",{"url":51,"name":13,"@type":53,"author":54,"headline":13,"publisher":56,"fileFormat":59,"inLanguage":23,"description":14,"dateModified":60,"datePublished":60,"encodingFormat":59,"isAccessibleForFree":61,"interactionStatistic":62},"DigitalDocument",{"name":9,"@type":55},"Person",{"url":41,"name":57,"@type":58},"DocShare","Organization","application/pdf","2026-08-27",true,{"@type":63,"interactionType":64,"userInteractionCount":4},"InteractionCounter",{"@type":65},"ViewAction",{"@type":67,"mainEntity":68},"FAQPage",[69,75,79],{"name":70,"@type":71,"acceptedAnswer":72},"What is the course about and what learning outcomes does it target?","Question",{"text":73,"@type":74},"The course focuses on species delimitation using molecular data, introducing coalescent theory and overviewing delimitation methods based on DNA. It also provides basic guidance for using tools such as Structurama, Brownie, STEM, STEM-hy, *BEAST, and bpp.","Answer",{"name":76,"@type":71,"acceptedAnswer":77},"What prerequisites are required before attending?",{"text":78,"@type":74},"Participants need basic knowledge of phylogenetics and some experience with tree inference using Maximum Likelihood and Bayesian methods. The course also includes advanced topics in phylogenetic theory.",{"name":80,"@type":71,"acceptedAnswer":81},"How can applicants apply and what is the deadline and participant limit?",{"text":82,"@type":74},"Apply by sending an application including a CV, a short description of the PhD/research project, how attending benefits the project, and a course project proposal to Magnus Popp before October 15, 2010. 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