[{"data":1,"prerenderedAt":-1},["ShallowReactive",2],{"doc-detail-192953-en":3,"doc-seo-192953-105":31,"detail-sidebar-cat-0-en-105":92},{"code":4,"msg":5,"data":6},0,"success",{"doc_id":7,"user_id":8,"nickname":9,"user_avatar":10,"doc_module":4,"category_id":11,"category_name":12,"doc_title":13,"doc_description":14,"doc_content":15,"file_id":16,"file_url":17,"file_type":18,"file_size":19,"view_count":20,"is_deleted":4,"is_public":21,"is_downloadable":21,"audit_status":21,"page_count":22,"language":23,"language_code":24,"site_id":25,"html_lang":24,"table_of_contents":26,"faqs":27,"seo_title":28,"seo_description":14,"update_tm":29,"read_time":30},192953,2336475104957,"นรินทร์","https://ap-avatar.wpscdn.com/avatar/22000c4c6bd8a5076e1?x-image-process=image/resize,m_fixed,w_180,h_180&k=1787554080175789136",8,"Research & Report","Sequences annotated by ontology - Overview of Dataset Statistics","Ontology-annotated sequences dataset statistics summarizing associations and sequence counts across multiple organisms, including Arabidopsis thaliana, Drosophila melanogaster, Homo sapiens, Plasmodium falciparum, Saccharomyces cerevisiae, Vibrio cholerae, and Caenorhabditis elegans. For each organism, totals are provided alongside annotations spanning Cellular Component, Molecular Function, and Biological Process categories. The content also defines an error-type taxonomy describing total agreement, typographical error, undefined sources, under-prediction, false negatives, domain errors, over-prediction, and false positives.","| Sequences annotated by ontology |  |  |  |  |  |\n| --- | --- | --- | --- | --- | --- |\n| Dataset | Total associations | Total sequences | Cellular Component | Molecular Function | Biological Process |\n| Arabidopsis thaliana | 290952(94824) | 20108(7969) [451] | 14851(2115) | 14467(7555) | 10454(3481) |\n| Drosophila melanogaster | 129694(29311) | 7536(7536) [0] | 3613(3589) | 6528(6520) | 3730(3723) |\n| Homo sapiens | 409153(67357) | 21251(9074) [659] | 13723(6516) | 19362(7328) | 17080(7707) |\n| Plasmodium falciparum | 36952(32536) | 2406(2209) [41] | 2061(1227) | 2094(2094) | 2044(2044) |\n| Saccharomyces cerevisiae | 136938(36267) | 6910(6849) [0] | 6751(6751) | 6831(6831) | 6899(6838) |\n| Vibrio cholerae | 42616(42616) | 2924(2924) [27] | 189(189) | 2721(2721) | 2923(2923) |\n| Caenorhabditis elegans | 109360(18626) | 6916(1870) [199] | 3054(650) | 5746(282) | 5102(1557) |\n\n\n| \u003Cbr>\u003Cbr>a | b |\n| --- | --- |\n|  | |\n\n\n| | b |\n| --- | --- |\n|  | |\n| \u003Cbr>|  d\u003Cbr>|\n| \u003Cbr>e\u003Cbr>| f |\n|  | |\n\n\n| \u003Cbr>| b\u003Cbr>\u003Cbr>|\n| --- | --- |\n\n|  | \u003Cbr>a | b\u003Cbr>\u003Cbr>|\n| --- | --- | --- |\n|  |  |  |\n|  |  |  |\n|  |  |  |\n\n\n| Category | Description | Comment |\n| --- | --- | --- |\n| 0\u003Cbr>1\u003Cbr>2 3\u003Cbr>4\u003Cbr>5 6\u003Cbr>7 | Total agreement Typographical error Undefined source Under-prediction\u003Cbr>False negative\u003Cbr>Domain error Over-prediction False positive | Original annotation is correct, but annotations may be only semantically (but not computationally) identical Original annotation contains typographical errors that may be propagated in the database\u003Cbr>Original annotation contains undefined terms, non-homology based predictions, and so on\u003Cbr>Original annotation predicts a nonspecific biochemical function although a more detailed prediction could have been made\u003Cbr>Original annotation does not provide predicted function although there is sufficient evidence to characterize the query protein\u003Cbr>Original annotation overlooks different domain structure of query and reference proteins\u003Cbr>Original annotation predicts a specific biochemical function without sufficient supporting evidence\u003Cbr>Original annotation predicts function without any supporting evidence |","cbCaip4dWLwdRiHR","https://ap.wps.com/l/cbCaip4dWLwdRiHR","pdf",551455,4,1,18,"English","en",105,"# Dataset Overview\n## Organism-wise Totals\n## Ontology Categories\n# Error Taxonomy\n## Agreement and Prediction Errors","[{\"question\":\"What organisms are included in the ontology-annotated sequences dataset?\",\"answer\":\"The dataset reports results for Arabidopsis thaliana, Drosophila melanogaster, Homo sapiens, Plasmodium falciparum, Saccharomyces cerevisiae, Vibrio cholerae, and Caenorhabditis elegans.\"},{\"question\":\"Which ontology annotation categories are used in the table?\",\"answer\":\"The annotation categories are Cellular Component, Molecular Function, and Biological Process.\"},{\"question\":\"What does the error taxonomy describe?\",\"answer\":\"It categorizes outcomes such as total agreement, typographical errors, undefined sources, under-prediction, false negatives, domain errors, over-prediction, and false positives, with explanations for each case.\"}]","Sequences annotated by ontology - Overview of Dataset Statistics | PDF",1788420530,45,{"code":4,"msg":32,"data":33},"ok",{"site_id":25,"language":24,"slug":34,"title":13,"keywords":35,"description":14,"schema_data":36,"social_meta":87,"head_meta":89,"extra_data":91,"updated_unix":29},"sequences-annotated-by-ontology-overview-of-dataset-statistics","",{"@graph":37,"@context":86},[38,54,69],{"@type":39,"itemListElement":40},"BreadcrumbList",[41,45,49,52],{"item":42,"name":43,"@type":44,"position":21},"https://docshare.wps.com","Home","ListItem",{"item":46,"name":47,"@type":44,"position":48},"https://docshare.wps.com/document/","Document",2,{"item":50,"name":12,"@type":44,"position":51},"https://docshare.wps.com/document/research-report/",3,{"item":53,"name":13,"@type":44,"position":20},"https://docshare.wps.com/document/sequences-annotated-by-ontology-overview-of-dataset-statistics/192953/",{"url":53,"name":13,"@type":55,"author":56,"headline":13,"publisher":58,"fileFormat":61,"inLanguage":24,"description":14,"dateModified":62,"datePublished":63,"encodingFormat":61,"isAccessibleForFree":64,"interactionStatistic":65},"DigitalDocument",{"name":9,"@type":57},"Person",{"url":42,"name":59,"@type":60},"DocShare","Organization","application/pdf","2026-09-05","2026-09-03",true,{"@type":66,"interactionType":67,"userInteractionCount":20},"InteractionCounter",{"@type":68},"ViewAction",{"@type":70,"mainEntity":71},"FAQPage",[72,78,82],{"name":73,"@type":74,"acceptedAnswer":75},"What organisms are included in the ontology-annotated sequences dataset?","Question",{"text":76,"@type":77},"The dataset reports results for Arabidopsis thaliana, Drosophila melanogaster, Homo sapiens, Plasmodium falciparum, Saccharomyces cerevisiae, Vibrio cholerae, and Caenorhabditis elegans.","Answer",{"name":79,"@type":74,"acceptedAnswer":80},"Which ontology annotation categories are used in the table?",{"text":81,"@type":77},"The annotation categories are Cellular Component, Molecular Function, and Biological Process.",{"name":83,"@type":74,"acceptedAnswer":84},"What does the error taxonomy describe?",{"text":85,"@type":77},"It categorizes outcomes such as total agreement, typographical errors, undefined sources, under-prediction, false negatives, domain errors, over-prediction, and false positives, with explanations for each case.","https://schema.org",{"og:url":53,"og:type":88,"og:title":13,"og:site_name":59,"og:description":14},"article",{"robots":90,"canonical":53},"index,follow",{"doc_id":7,"site_id":25},{"code":4,"msg":5,"data":93},[94,98,102,106,111,116,121,124,129,132,136],{"id":21,"doc_module":4,"doc_module_name":47,"category_name":95,"show_sort_weight":96,"slug":97},"Story & Novel",90,"story-novel",{"id":48,"doc_module":4,"doc_module_name":47,"category_name":99,"show_sort_weight":100,"slug":101},"Literature",80,"literature",{"id":20,"doc_module":4,"doc_module_name":47,"category_name":103,"show_sort_weight":104,"slug":105},"Exam",70,"exam",{"id":107,"doc_module":4,"doc_module_name":47,"category_name":108,"show_sort_weight":109,"slug":110},5,"Comic",60,"comic",{"id":112,"doc_module":4,"doc_module_name":47,"category_name":113,"show_sort_weight":114,"slug":115},6,"Technology",50,"technology",{"id":117,"doc_module":4,"doc_module_name":47,"category_name":118,"show_sort_weight":119,"slug":120},7,"Healthcare",40,"healthcare",{"id":11,"doc_module":4,"doc_module_name":47,"category_name":12,"show_sort_weight":122,"slug":123},30,"research-report",{"id":125,"doc_module":4,"doc_module_name":47,"category_name":126,"show_sort_weight":127,"slug":128},9,"Religion & Spirituality",20,"religion-spirituality",{"id":127,"doc_module":4,"doc_module_name":47,"category_name":130,"show_sort_weight":127,"slug":131},"World Cup","world-cup",{"id":133,"doc_module":4,"doc_module_name":47,"category_name":134,"show_sort_weight":133,"slug":135},10,"Lifestyle","lifestyle",{"id":137,"doc_module":4,"doc_module_name":47,"category_name":138,"show_sort_weight":107,"slug":139},19,"General","general"]