[{"data":1,"prerenderedAt":-1},["ShallowReactive",2],{"doc-detail-118704-en":3,"doc-seo-118704-105":30,"detail-sidebar-cat-0-en-105":92},{"code":4,"msg":5,"data":6},0,"success",{"doc_id":7,"user_id":8,"nickname":9,"user_avatar":10,"doc_module":4,"category_id":11,"category_name":12,"doc_title":13,"doc_description":14,"doc_content":15,"file_id":16,"file_url":17,"file_type":18,"file_size":19,"view_count":20,"is_deleted":4,"is_public":20,"is_downloadable":20,"audit_status":20,"page_count":21,"language":22,"language_code":23,"site_id":24,"html_lang":23,"table_of_contents":25,"faqs":26,"seo_title":27,"seo_description":14,"update_tm":28,"read_time":29},118704,7971461741311,"Ophelia","https://ap-avatar.wpscdn.com/avatar/74000253aff267980c6?x-image-process=image/resize,m_fixed,w_180,h_180&k=1779345379180704826",8,"Research & Report","Machine Learning for Multi-Source Data Integration - Thesis Summary","This thesis presents statistical methods for integrating data from multiple sources, targeting applications in gene regulation and co-expression inference. Integrating heterogeneous biological datasets often violates the independent and identically distributed assumption, and the work develops computational tools to address these practical obstacles. It introduces generative models for multi-view biological signals and proposes robust inference for co-expression networks with theoretical guarantees. It also develops e-value-based sequential testing frameworks enabling continuous monitoring and efficient evidence aggregation while controlling type I error without multiple-testing corrections.","UvA-DARE (Digital Academic Repository)  \nMachine learning for multi-source data integration  \nPandeva, T. P.  \nPublication date  \n2025  \nDocument Version  \nFinal published version  \nLink to publication  \nCitation for published version (APA):  \nPandeva, T. P. (2025) . Machine learning for multi-source data integration. [Thesis, fully internal, Universiteit van Amsterdam] .  \nGeneral rights  \nIt is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons) .  \nDisclaimer/Complaints regulations  \nIf you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. In case of a legitimate complaint, the Library will make the material inaccessible and/or remove it from the website. Please Ask the Library: [https://uba.uva.nl/en/contact](https://uba.uva.nl/en/contact), or a letter to: Library of the University of Amsterdam, Secretariat, P.O. Box 19185, 1000 GD Amsterdam, The Netherlands. You will be contacted as soon as possible.  \nUvA-DARE is a service provided by the library of the University of Amsterdam ( [http](https://dare. uva. nl)[s](https://dare. uva. nl)[://dare. uva. nl](https://dare. uva. nl))  \nDownload date:01 May 2026  \nMACHINE LEARNING FOR MULTI-SOURCE DATA INTEGRATION TEODORA PANDEVA  \nMachine Learning for Multi-Source Data Integration  \nTeodora Pandeva  \nMACHINE LEARNING FOR MULTI-SOURCE DATA INTEGRATION  \nteodora pandeva  \nCopyright © 2025 Teodora Pandeva  \nAll rights reserved. No part of this publication may be reproduced, stored in a retrieval system or transmitted in any form or by any means electronic, mechanical, photocopying, recording or otherwise, without the prior written permission of the author.  \nThe thesis was printed by Ridderprint. Thank you.  \nMachine Learning for Multi-Source Data Integration  \nACADEMISCH PROEFSCHRIFT  \nter verkrijging van de graad van doctor  \naan de Universiteit van Amsterdam  \nop gezag van de Rector Magnificus  \n[prof. dr. ir. P.P.C.C. Verbeek](prof. dr. ir. P.P.C.C. Verbeek)  \nten overstaan van een door het College voor Promoties ingestelde commissie, in het openbaar te verdedigen in de Agnietenkapel op donderdag 26 juni 2025, te 13.00 uur  \ndoor Teodora Plamenova Pandeva  \ngeboren te Sofia  \nPromotiecommissie  \nPromotores:  \nCopromotores:  \nOverige leden:  \ndr. P.D. Forré  \nprof. dr. L.W. Hamoen  \nprof. dr. J.M. Mooij dr. M.J. Jonker  \nprof. dr. P.D. Grünwald prof. dr. A.D.J. van Dijk dr. E.T. Nalisnick prof. dr. F.P. Pijpers dr. V. Krzhizhanovskaya prof. dr. A.J. Hyvärinen  \nUniversiteit van Amsterdam  \nUniversiteit van Amsterdam  \nUniversiteit van Amsterdam  \nUniversiteit van Amsterdam  \nUniversiteit Leiden  \nUniversiteit van Amsterdam Johns Hopkins University Universiteit van Amsterdam  \nUniversiteit van Amsterdam University of Helsinki  \nFaculteit der Natuurwetenschappen, Wiskunde en Informatica  \nIn the memory of my loving grandmother, Evdokiya Milanova.  \n1941–2021  \nSUMMARY  \nThis thesis presents statistical methods for data integration from multiple sources with applications to gene regulation/co-expression inference. When combining multiple sources to extract deeper insights, the practitioner often encounters challenges that break the independent and identically distributed assumption of the data. This thesis addresses several of these obstacles by advancing computational methods for integrating heterogeneous biological data and developing robust, flexible sequential testing frameworks that can adapt to complex, real-world datasets.  \nThe first part of this thesis proposes generative models designed to extract meaningful biological information from diverse datasets:  \n• Multi-view Independent Component Analysis with Shared and Individual Sources  \nWe propose a framework wher","cbCaif82jTgeXalU","https://ap.wps.com/l/cbCaif82jTgeXalU","pdf",8792498,1,200,"English","en",105,"# Summary\n## Generative models for heterogeneous biological data\n## Robust co-expression network inference\n## E-values and sequential hypothesis testing\n## E-valuating classifier two-sample tests\n## Deep anytime-valid hypothesis testing","[{\"question\":\"What is the main goal of the thesis?\",\"answer\":\"The thesis aims to develop statistical and computational methods for integrating data from multiple sources, with applications to gene regulation and gene co-expression inference.\"},{\"question\":\"How does the thesis handle violations of the i.i.d. assumption?\",\"answer\":\"It addresses real-world integration challenges by modeling heterogeneous biological datasets with robust frameworks that do not rely on i.i.d. assumptions.\"},{\"question\":\"What role do e-values play in the sequential testing framework?\",\"answer\":\"E-values provide a p-value-like measure with advantages such as continuous monitoring of data streams, efficient aggregation of evidence, and tight control of type I error without multiple-testing corrections.\"}]","Machine Learning for Multi-Source Data Integration - Thesis Summary | PDF",1785684988,504,{"code":4,"msg":31,"data":32},"ok",{"site_id":24,"language":23,"slug":33,"title":13,"keywords":34,"description":14,"schema_data":35,"social_meta":87,"head_meta":89,"extra_data":91,"updated_unix":28},"machine-learning-for-multi-source-data-integration-thesis-summary","",{"@graph":36,"@context":86},[37,54,69],{"@type":38,"itemListElement":39},"BreadcrumbList",[40,44,48,51],{"item":41,"name":42,"@type":43,"position":20},"https://docshare.wps.com","Home","ListItem",{"item":45,"name":46,"@type":43,"position":47},"https://docshare.wps.com/document/","Document",2,{"item":49,"name":12,"@type":43,"position":50},"https://docshare.wps.com/document/research-report/",3,{"item":52,"name":13,"@type":43,"position":53},"https://docshare.wps.com/document/machine-learning-for-multi-source-data-integration-thesis-summary/118704/",4,{"url":52,"name":13,"@type":55,"author":56,"headline":13,"publisher":58,"fileFormat":61,"inLanguage":23,"description":14,"dateModified":62,"datePublished":63,"encodingFormat":61,"isAccessibleForFree":64,"interactionStatistic":65},"DigitalDocument",{"name":9,"@type":57},"Person",{"url":41,"name":59,"@type":60},"DocShare","Organization","application/pdf","2026-08-04","2026-08-02",true,{"@type":66,"interactionType":67,"userInteractionCount":20},"InteractionCounter",{"@type":68},"ViewAction",{"@type":70,"mainEntity":71},"FAQPage",[72,78,82],{"name":73,"@type":74,"acceptedAnswer":75},"What is the main goal of the thesis?","Question",{"text":76,"@type":77},"The thesis aims to develop statistical and computational methods for integrating data from multiple sources, with applications to gene regulation and gene co-expression inference.","Answer",{"name":79,"@type":74,"acceptedAnswer":80},"How does the thesis handle violations of the i.i.d. assumption?",{"text":81,"@type":77},"It addresses real-world integration challenges by modeling heterogeneous biological datasets with robust frameworks that do not rely on i.i.d. assumptions.",{"name":83,"@type":74,"acceptedAnswer":84},"What role do e-values play in the sequential testing framework?",{"text":85,"@type":77},"E-values provide a p-value-like measure with advantages such as continuous monitoring of data streams, efficient aggregation of evidence, and tight control of type I error without multiple-testing corrections.","https://schema.org",{"og:url":52,"og:type":88,"og:title":13,"og:site_name":59,"og:description":14},"article",{"robots":90,"canonical":52},"index,follow",{"doc_id":7,"site_id":24},{"code":4,"msg":5,"data":93},[94,98,102,106,111,116,121,124,129,132,136],{"id":20,"doc_module":4,"doc_module_name":46,"category_name":95,"show_sort_weight":96,"slug":97},"Story & Novel",90,"story-novel",{"id":47,"doc_module":4,"doc_module_name":46,"category_name":99,"show_sort_weight":100,"slug":101},"Literature",80,"literature",{"id":53,"doc_module":4,"doc_module_name":46,"category_name":103,"show_sort_weight":104,"slug":105},"Exam",70,"exam",{"id":107,"doc_module":4,"doc_module_name":46,"category_name":108,"show_sort_weight":109,"slug":110},5,"Comic",60,"comic",{"id":112,"doc_module":4,"doc_module_name":46,"category_name":113,"show_sort_weight":114,"slug":115},6,"Technology",50,"technology",{"id":117,"doc_module":4,"doc_module_name":46,"category_name":118,"show_sort_weight":119,"slug":120},7,"Healthcare",40,"healthcare",{"id":11,"doc_module":4,"doc_module_name":46,"category_name":12,"show_sort_weight":122,"slug":123},30,"research-report",{"id":125,"doc_module":4,"doc_module_name":46,"category_name":126,"show_sort_weight":127,"slug":128},9,"Religion & Spirituality",20,"religion-spirituality",{"id":127,"doc_module":4,"doc_module_name":46,"category_name":130,"show_sort_weight":127,"slug":131},"World Cup","world-cup",{"id":133,"doc_module":4,"doc_module_name":46,"category_name":134,"show_sort_weight":133,"slug":135},10,"Lifestyle","lifestyle",{"id":137,"doc_module":4,"doc_module_name":46,"category_name":138,"show_sort_weight":107,"slug":139},19,"General","general"]