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Stan Tsai, Ph. D. Department of Chemistry and Institute of Biochemistry Carleton University  \nOttawa, Ontario, Canada  \nA JOHN WILEY & SONS, INC., PUBLICATION  \nThis book is printed on acid-free paper. 􀀁  \nCopyright 􀀁 2002 by Wiley-Liss, Inc., New York. All rights reserved.  \nPublished simultaneously in Canada.  \nNo part of this publication may be reproduced, stored in a retrieval system or transmitted in any form or by any means, electronic, mechanical, photocopying, recording, scanning or otherwise, except as permitted under Section 107 or 108 of the 1976 United States Copyright Act, without either the  \nprior written permission of the Publisher, or authorization through payment of the appropriate per-copy fee to the Copyright Clearance Center, 222 Rosewood Drive, Danvers, MA 01923,(978) 750-8400, fax (978) 750-4744. Requests to the Publisher for permission should be addressed to the Permissions Department, John Wiley & Sons, Inc., 605 Third Avenue, New York, NY 10158-0012,(212) 850-6011, fax (212) 850-6008, E-Mail: PERMREQ􀀂WILEY.COM.  \nFor ordering and customer service information please call 1-800-CALL-WILEY.  \nLibrary of Congress Cataloging-in-Publication Data:  \nTsai, C. Stan.  \nAn introduction to computational biochemistry / C. Stan Tsai.  \n[p. cm](p. cm).  \nIncludes bibliographical references and index.  \nISBN 0-471-40120-X (pbk. : alk. paper)  \n1. Biochemistry--Data processing. 2. Biochemistry--Computer simulation. 3.  \nBiochemistry--Mathematics. I. Title.  \nQP517.M3 T733 2002  \n572􀀁 .0285--dc21 2001057366  \nPrinted in the United States of America.  \n10 9 8 7 6 5 4 3 2 1  \nCONTENTS  \nPreface ............................................... ix  \n1 INTRODUCTION 1  \n1.1. Biochemistry: Studies of Life at the Molecular Level ......... 1  \n1.2. Computer Science and Computational Sciences ............. 5  \n1.3. Computational Biochemistry: Application of Computer Technology to Biochemistry ............................ 6  \nReferences ............................................. 9  \n2 BIOCHEMICAL DATA: ANALYSIS AND  \nMANAGEMENT 11  \n2.1. Statistical Analysis of Biochemical Data .................. 11  \n2.2. Biochemical Data Analysis with Spreadsheet Application ..... 20  \n2.3. Biochemical Data Management with Database Program ...... 28  \n2.4. Workshops ......................................... 31  \nReferences ............................................. 40  \n3 BIOCHEMICAL EXPLORATION: INTERNET RESOURCES 41  \n3.1. Introduction to Internet ............................... 41  \n3.2. Internet Resources of Biochemical Interest ................. 46  \n3.3. Database Retrieval ................................... 48  \n3.4. Workshops ......................................... 52  \nReferences ............................................. 52  \n4 MOLECULAR GRAPHICS: VISUALIZATION OF  \nBIOMOLECULES 53  \n4.1. Introduction to Computer Graphics ..................... 53  \n4.2. Representation of Molecular Structures ................... 56  \n4.3. Drawing and Display of Molecular Structures .............. 60  \n4.4. Workshops ......................................... 69  \nReferences ............................................. 70 v  \nvi CONTENTS  \n5 BIOCHEMICAL COMPOUNDS: STRUCTURE AND  \nANALYSIS 73  \n5.1. Survey of Biomolecules ............................... 73  \n5.2. Characterization of Biomolecular Structures ............... 80  \n5.3. Fitting and Search of Biomolecular Data and Information .... 87  \n5.4. Workshops ......................................... 98  \nReferences ............................................. 103  \n6 DYNAMIC BIOCHEMISTRY: BIOMOLECULAR  \nINTERACTIONS 107  \n6.1. Biomacromolecule—Ligand Interactions ................... 107  \n6.2. Receptor Biochemistry and Signal Transduction ............ 111  \n6.3. Fitting of Binding Data and Search for Receptor Databases ... 113  \n6.4. Workshops ......................................... 119  \nRe","cbCaiqDR5btMYKAw","https://ap.wps.com/l/cbCaiqDR5btMYKAw","pdf",6578751,370,"English","# Preface\n# INTRODUCTION\n## Biochemistry: Studies of Life at the Molecular Level\n## Computer Science and Computational Sciences\n## Computational Biochemistry: Application of Computer Technology to Biochemistry\n# BIOCHEMICAL DATA: ANALYSIS AND MANAGEMENT\n## Statistical Analysis of Biochemical Data\n## Biochemical Data Analysis with Spreadsheet Application\n## Biochemical Data Management with Database Program\n## Workshops\n# BIOCHEMICAL EXPLORATION: INTERNET RESOURCES\n## Introduction to Internet\n## Internet Resources of Biochemical Interest\n## Database Retrieval\n## Workshops\n# MOLECULAR GRAPHICS: VISUALIZATION OF BIOMOLECULES\n## Introduction to Computer Graphics\n## Representation of Molecular Structures\n## Drawing and Display of Molecular Structures\n## Workshops","[{\"question\":\"What topics are covered in the book’s introduction section?\",\"answer\":\"The introduction covers biochemistry at the molecular level, the role of computer science and computational sciences, and how computational biochemistry applies computer technology to biochemistry.\"},{\"question\":\"How does the book teach biochemical data handling and analysis?\",\"answer\":\"It focuses on statistical analysis, analysis using spreadsheet applications, and management using database programs, along with workshop components for practical learning.\"},{\"question\":\"Which dynamic and omics areas are included beyond data analysis?\",\"answer\":\"It includes biomolecular interactions, receptor biochemistry and signal transduction, fitting and search of binding data, enzyme kinetics, metabolic simulation, and genomics and proteomics sequence analysis.\"}]","An introduction to computational biochemistry - Preface | PDF",1789975787,932]